Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs112509138 chr2:242596885 A/G 6.19E-11 175 25.87 24.85 10.3 KM Plot
PCPG rs112519565 chr16:1768430 C/T 1.76E-11 173 25.67 18.75 4.52 KM Plot
PCPG rs112521003 chr13:114151866 T/C 5.47E-12 175 24.17 29.57 3.32 KM Plot
PCPG rs112544894 chr16:89906320 CTG/C 0.00018 173 25.87 22.63 36.37 KM Plot
PCPG rs112551311 chr16:1768475 G/A 1.76E-11 173 25.67 18.75 4.52 KM Plot
PCPG rs112584275 chr7:66381426 G/A 0.000217 178 24.7 29.57 33.17 KM Plot
PCPG rs112611466 chr12:131365662 G/GGT 1.12E-7 174 24.7 32.32 19.87 KM Plot
PCPG rs112667834 chr5:33991129 C/CA 1.0E-5 172 24.62 30.93 25.17 KM Plot
PCPG rs112697287 chr13:114151949 T/A 0.000416 176 24.23 28.95 3.7 KM Plot
PCPG rs112704735 chr9:5911794 C/A 6.15E-5 177 25.87 11.85 15.07 KM Plot
PCPG rs112716657 chr3:182611059 A/C 9.84E-6 175 25.87 27.23 11.78 KM Plot
PCPG rs11274011 chr13:114183018 GTGATAAGAGGGTCCTTATGATAAGAGGGTCCTTA/ATGATAAGAGGGTC 5.45E-12 176 24.1 30.33 3.32 KM Plot
PCPG rs112750745 chr10:69598134 T/C 0 173 25.87 18.2 2.28 KM Plot
PCPG rs112759844 chr9:86661483 C/T 1.73E-5 172 26.22 23.43 10.3 KM Plot
PCPG rs112766597 chr16:1767859 C/CT 0 170 25.77 19.3 2.93 KM Plot